I have submitted a few sample files via the "false positive" automated system, but I have too many to submit. Here is a somewhat lengthy list - all of them related to a seemingly legitimate Visual Studio 14 install (hash verified with Microsoft before installation, although I do realize that malware can infect after the fact).
File Name Infection Action
C:\Program Files (x86)\Microsoft Web Tools\Packages\Microsoft.Net.Compilers.1.0.0\tools\Microsoft.CodeAnalysis.CSharp.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\Microsoft Web Tools\Packages\Microsoft.Net.Compilers.1.0.0\tools\System.Reflection.Metadata.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\Microsoft Web Tools\Packages\Microsoft.Net.Compilers.1.0.0\tools\Microsoft.CodeAnalysis.VisualBasic.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\Microsoft Web Tools\Packages\Microsoft.Net.Compilers.1.0.0\tools\Microsoft.CodeAnalysis.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\Microsoft Web Tools\Packages\Microsoft.Net.Compilers.1.0.0\tools\VBCSCompiler.exe Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\Microsoft Web Tools\DNX\dnx-clr-win-x64.1.0.0-beta8\bin\Microsoft.CodeAnalysis.CSharp.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\Microsoft Web Tools\DNX\dnx-clr-win-x64.1.0.0-beta8\bin\Microsoft.CodeAnalysis.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\Microsoft Web Tools\DNX\dnx-clr-win-x86.1.0.0-beta8\bin\Microsoft.CodeAnalysis.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\Microsoft Web Tools\DNX\dnx-clr-win-x86.1.0.0-beta8\bin\Microsoft.CodeAnalysis.CSharp.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\Microsoft Web Tools\DNX\dnx-coreclr-win-x64.1.0.0-beta8\bin\Microsoft.CodeAnalysis.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\Microsoft Web Tools\DNX\dnx-coreclr-win-x64.1.0.0-beta8\bin\Microsoft.CodeAnalysis.CSharp.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\Microsoft Web Tools\DNX\dnx-coreclr-win-x86.1.0.0-beta8\bin\Microsoft.CodeAnalysis.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\Microsoft Web Tools\DNX\dnx-coreclr-win-x86.1.0.0-beta8\bin\Microsoft.CodeAnalysis.CSharp.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\MSBuild\14.0\Bin\Microsoft.CodeAnalysis.CSharp.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\MSBuild\14.0\Bin\Microsoft.CodeAnalysis.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\MSBuild\14.0\Bin\Microsoft.CodeAnalysis.VisualBasic.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\MSBuild\14.0\Bin\Microsoft.CodeAnalysis.Scripting.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\MSBuild\14.0\Bin\Microsoft.Build.Tasks.CodeAnalysis.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\MSBuild\14.0\Bin\csc.exe Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\MSBuild\14.0\Bin\VBCSCompiler.exe Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\MSBuild\14.0\Bin\vbc.exe Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\Microsoft ASP.NET\ASP.NET Web Stack 5\Packages\Microsoft.Net.Compilers.1.0.0\tools\VBCSCompiler.exe Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\MSBuild\14.0\Bin\amd64\Microsoft.CodeAnalysis.CSharp.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\MSBuild\14.0\Bin\amd64\Microsoft.CodeAnalysis.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\MSBuild\14.0\Bin\amd64\Microsoft.Build.Tasks.CodeAnalysis.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\MSBuild\14.0\Bin\amd64\Microsoft.CodeAnalysis.Scripting.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\MSBuild\14.0\Bin\amd64\Microsoft.CodeAnalysis.VisualBasic.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\MSBuild\14.0\Bin\amd64\VBCSCompiler.exe Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\MSBuild\14.0\Bin\amd64\csc.exe Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\MSBuild\14.0\Bin\amd64\vbc.exe Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\Microsoft Visual Studio 14.0\Common7\IDE\PrivateAssemblies\Microsoft.CodeAnalysis.VisualBasic.Features.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\Microsoft Visual Studio 14.0\Common7\IDE\PrivateAssemblies\Microsoft.CodeAnalysis.Workspaces.Desktop.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\Microsoft Visual Studio 14.0\Common7\IDE\PrivateAssemblies\Microsoft.CodeAnalysis.EditorFeatures.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\Microsoft Visual Studio 14.0\Common7\IDE\PrivateAssemblies\Microsoft.CodeAnalysis.CSharp.Workspaces.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\Microsoft Visual Studio 14.0\Common7\IDE\PrivateAssemblies\Microsoft.CodeAnalysis.CSharp.Features.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\Microsoft Visual Studio 14.0\Common7\IDE\PrivateAssemblies\Microsoft.CodeAnalysis.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\Microsoft Visual Studio 14.0\Common7\IDE\PrivateAssemblies\Microsoft.CodeAnalysis.Workspaces.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\Microsoft Visual Studio 14.0\Common7\IDE\PrivateAssemblies\Microsoft.CodeAnalysis.Features.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\Microsoft Visual Studio 14.0\Common7\IDE\PrivateAssemblies\Microsoft.CodeAnalysis.Scripting.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\Microsoft Visual Studio 14.0\Common7\IDE\PrivateAssemblies\Microsoft.CodeAnalysis.CSharp.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\Microsoft Visual Studio 14.0\Common7\IDE\PrivateAssemblies\Microsoft.VisualStudio.LanguageServices.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
C:\Program Files (x86)\Microsoft Visual Studio 14.0\Common7\IDE\PrivateAssemblies\Microsoft.CodeAnalysis.VisualBasic.dll Gen:Heur.MSIL.Krypt.2 Moved to Quarantine
Edit: Suppose I should actually ask a question... anyone else see this? What is the best way to batch upload these files for analysis?